Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ushbp1Q8R370 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Ushbp1Q8R370 Gm12957-201ENSMUST00000117835 377 ntBASIC15.07■□□□□ 0
Ushbp1Q8R370 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Gm27839-201ENSMUST00000184242 106 ntBASIC15.07■□□□□ 0
Ushbp1Q8R370 Mir7654-201ENSMUST00000185082 70 ntBASIC15.07■□□□□ 0
Ushbp1Q8R370 Gm45841-201ENSMUST00000207700 164 ntBASIC15.07■□□□□ 0
Ushbp1Q8R370 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC15.07■□□□□ 0
Ushbp1Q8R370 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Gm9924-202ENSMUST00000192760 2311 ntBASIC15.07■□□□□ 0
Ushbp1Q8R370 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 AC161252.3-201ENSMUST00000225465 1549 ntBASIC15.07■□□□□ 0
Ushbp1Q8R370 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ushbp1Q8R370 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC15.06■□□□□ 0
Ushbp1Q8R370 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Gm18041-201ENSMUST00000218210 618 ntBASIC15.06■□□□□ 0
Ushbp1Q8R370 Gm7446-201ENSMUST00000221035 1240 ntBASIC15.06■□□□□ 0
Ushbp1Q8R370 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Gm3695-201ENSMUST00000087222 1009 ntBASIC15.06■□□□□ 0
Ushbp1Q8R370 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ushbp1Q8R370 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ushbp1Q8R370 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Ushbp1Q8R370 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Gm13730-201ENSMUST00000121036 1462 ntBASIC15.06■□□□□ 0
Ushbp1Q8R370 Gm37015-201ENSMUST00000192763 1521 ntBASIC15.06■□□□□ 0
Ushbp1Q8R370 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.06■□□□□ 0
Ushbp1Q8R370 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ushbp1Q8R370 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC15.05■□□□□ 0
Ushbp1Q8R370 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Ushbp1Q8R370 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ushbp1Q8R370 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ushbp1Q8R370 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
Ushbp1Q8R370 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Ushbp1Q8R370 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ushbp1Q8R370 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Gm7558-201ENSMUST00000193221 1165 ntBASIC15.05■□□□□ -0
Ushbp1Q8R370 Gm5279-201ENSMUST00000199575 745 ntBASIC15.05■□□□□ -0
Ushbp1Q8R370 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC15.05■□□□□ -0
Ushbp1Q8R370 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC15.05■□□□□ -0
Ushbp1Q8R370 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Ushbp1Q8R370 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Ushbp1Q8R370 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Ushbp1Q8R370 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gm4782-201ENSMUST00000168705 2046 ntBASIC15.04■□□□□ -0
Ushbp1Q8R370 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Ushbp1Q8R370 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ushbp1Q8R370 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms