Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Oard1-202ENSMUST00000167180 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col17a1Q07563 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC20.12■□□□□ 0.81
Col17a1Q07563 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC20.12■□□□□ 0.81
Col17a1Q07563 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC20.12■□□□□ 0.81
Col17a1Q07563 Gm43854-201ENSMUST00000200418 394 ntBASIC20.12■□□□□ 0.81
Col17a1Q07563 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC20.12■□□□□ 0.81
Col17a1Q07563 Gm6430-201ENSMUST00000054664 1248 ntBASIC20.12■□□□□ 0.81
Col17a1Q07563 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Col17a1Q07563 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col17a1Q07563 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Gm3332-201ENSMUST00000189337 928 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC20.11■□□□□ 0.81
Col17a1Q07563 AC135669.1-202ENSMUST00000216742 540 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Ap3s1-202ENSMUST00000224622 978 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 2310016G11Rik-201ENSMUST00000094460 992 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Col17a1Q07563 Gm28882-201ENSMUST00000185504 314 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 Gm17827-201ENSMUST00000211825 742 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 CT030653.1-201ENSMUST00000224382 1279 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 AC167013.1-201ENSMUST00000228592 202 ntBASIC20.11■□□□□ 0.81
Col17a1Q07563 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col17a1Q07563 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 AC137950.2-202ENSMUST00000227150 1635 ntBASIC20.1■□□□□ 0.81
Col17a1Q07563 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Col17a1Q07563 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC20.1■□□□□ 0.81
Col17a1Q07563 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC20.1■□□□□ 0.81
Col17a1Q07563 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Col17a1Q07563 Gm37859-201ENSMUST00000195529 2173 ntBASIC20.1■□□□□ 0.81
Col17a1Q07563 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Col17a1Q07563 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col17a1Q07563 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Gm11422-201ENSMUST00000118925 1103 ntBASIC20.09■□□□□ 0.81
Col17a1Q07563 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Gm9785-201ENSMUST00000062642 1006 ntBASIC20.09■□□□□ 0.81
Col17a1Q07563 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col17a1Q07563 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Col17a1Q07563 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.81
Col17a1Q07563 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col17a1Q07563 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms