Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HDAC4P56524 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
HDAC4P56524 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.19■□□□□ 0.34
HDAC4P56524 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.19■□□□□ 0.34
HDAC4P56524 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 AC092902.6-201ENST00000641783 218 ntBASIC17.19■□□□□ 0.34
HDAC4P56524 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HDAC4P56524 WASH6P-202ENST00000359512 1437 ntBASIC17.19■□□□□ 0.34
HDAC4P56524 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.19■□□□□ 0.34
HDAC4P56524 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HDAC4P56524 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HDAC4P56524 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.18■□□□□ 0.34
HDAC4P56524 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.18■□□□□ 0.34
HDAC4P56524 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.18■□□□□ 0.34
HDAC4P56524 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
HDAC4P56524 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.18■□□□□ 0.34
HDAC4P56524 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
HDAC4P56524 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.18■□□□□ 0.34
HDAC4P56524 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.18■□□□□ 0.34
HDAC4P56524 FAM58CP-201ENST00000435741 640 ntBASIC17.18■□□□□ 0.34
HDAC4P56524 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.18■□□□□ 0.34
HDAC4P56524 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.18■□□□□ 0.34
HDAC4P56524 AL161645.1-201ENST00000622716 1255 ntBASIC17.18■□□□□ 0.34
HDAC4P56524 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.18■□□□□ 0.34
HDAC4P56524 MTHFR-217ENST00000641820 1569 ntBASIC17.18■□□□□ 0.34
HDAC4P56524 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HDAC4P56524 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.17■□□□□ 0.34
HDAC4P56524 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HDAC4P56524 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 DOC2GP-204ENST00000639052 2548 ntBASIC17.17■□□□□ 0.34
HDAC4P56524 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.17■□□□□ 0.34
HDAC4P56524 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 KRT18P34-201ENST00000488218 1270 ntBASIC17.17■□□□□ 0.34
HDAC4P56524 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.17■□□□□ 0.34
HDAC4P56524 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.17■□□□□ 0.34
HDAC4P56524 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.17■□□□□ 0.34
HDAC4P56524 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.17■□□□□ 0.34
HDAC4P56524 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HDAC4P56524 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.17■□□□□ 0.34
HDAC4P56524 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms