Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Col1a1P11087 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
Col1a1P11087 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC15.52■□□□□ 0.08
Col1a1P11087 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Col1a1P11087 Gm3096-201ENSMUST00000185770 364 ntBASIC15.52■□□□□ 0.08
Col1a1P11087 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC15.52■□□□□ 0.08
Col1a1P11087 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC15.52■□□□□ 0.08
Col1a1P11087 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Col1a1P11087 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Col1a1P11087 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Col1a1P11087 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Col1a1P11087 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Col1a1P11087 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.07
Col1a1P11087 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
Col1a1P11087 Gm13875-201ENSMUST00000120162 282 ntBASIC15.52■□□□□ 0.07
Col1a1P11087 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Col1a1P11087 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Col1a1P11087 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Gm42997-202ENSMUST00000200321 985 ntBASIC15.52■□□□□ 0.07
Col1a1P11087 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC15.52■□□□□ 0.07
Col1a1P11087 Gm8959-201ENSMUST00000213150 571 ntBASIC15.52■□□□□ 0.07
Col1a1P11087 AC161537.1-201ENSMUST00000226199 1015 ntBASIC15.52■□□□□ 0.07
Col1a1P11087 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Col1a1P11087 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col1a1P11087 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
Col1a1P11087 Gm38157-201ENSMUST00000194178 1698 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col1a1P11087 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 Gm44405-201ENSMUST00000198952 126 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 Gm43378-201ENSMUST00000199336 582 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 Gm5904-201ENSMUST00000210286 865 ntBASIC15.51■□□□□ 0.07
Col1a1P11087 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Col1a1P11087 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Col1a1P11087 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Col1a1P11087 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm14371-201ENSMUST00000138925 1518 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Col1a1P11087 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm8908-201ENSMUST00000121633 1024 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC15.5■□□□□ 0.07
Col1a1P11087 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm26361-201ENSMUST00000158868 186 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Gm18916-201ENSMUST00000198264 1246 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 Ighv8-10-201ENSMUST00000199579 358 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC15.5■□□□□ 0.07
Col1a1P11087 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Col1a1P11087 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col1a1P11087 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 Gm37737-201ENSMUST00000195013 1638 ntBASIC15.5■□□□□ 0.07
Col1a1P11087 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC15.5■□□□□ 0.07
Col1a1P11087 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms