Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm5656-201ENSMUST00000171020 1096 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Hoxd3P09027 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm27892-201ENSMUST00000185017 106 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm30667-201ENSMUST00000193120 870 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm38217-201ENSMUST00000194358 910 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 Cnot2-201ENSMUST00000020374 1059 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm18934-201ENSMUST00000216671 1044 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 AC138290.1-201ENSMUST00000219242 820 ntTSL 5 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm17794-201ENSMUST00000220252 955 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC10.54□□□□□ -0.72
Hoxd3P09027 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
Hoxd3P09027 Gm37019-201ENSMUST00000192133 2134 ntBASIC10.54□□□□□ -0.72
Hoxd3P09027 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm19863-201ENSMUST00000192480 2218 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm9816-201ENSMUST00000122292 1414 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm16342-201ENSMUST00000124025 1025 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm26736-201ENSMUST00000180425 1236 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gm38223-201ENSMUST00000194484 695 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Rnf212-202ENSMUST00000196652 853 ntTSL 2 BASIC10.53□□□□□ -0.72
Hoxd3P09027 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC10.53□□□□□ -0.72
Hoxd3P09027 AC129597.1-201ENSMUST00000223046 1234 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 CT009713.1-201ENSMUST00000224828 853 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC10.53□□□□□ -0.72
Hoxd3P09027 AC131997.1-201ENSMUST00000228611 1229 ntBASIC10.53□□□□□ -0.72
Hoxd3P09027 4930555F03Rik-201ENSMUST00000033963 717 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 2310061N02Rik-201ENSMUST00000050882 794 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Hoxd3P09027 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hoxd3P09027 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
Hoxd3P09027 Gm8337-201ENSMUST00000187358 1938 ntBASIC10.52□□□□□ -0.72
Hoxd3P09027 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC10.52□□□□□ -0.72
Hoxd3P09027 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hoxd3P09027 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hoxd3P09027 Gm8131-201ENSMUST00000213783 1570 ntBASIC10.52□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms