Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Tns3-201ENSMUST00000020695 7483 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Adgrl3-217ENSMUST00000121707 6690 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Camk1d-201ENSMUST00000044009 6962 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC11.1□□□□□ -0.63
Hmgb3O54879 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gm5177-201ENSMUST00000183092 997 ntBASIC11.1□□□□□ -0.63
Hmgb3O54879 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Slc1a2-202ENSMUST00000080210 11595 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Pum1-201ENSMUST00000030315 5389 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Hmgb3O54879 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC11.1□□□□□ -0.63
Hmgb3O54879 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Gm44891-201ENSMUST00000208817 2223 ntBASIC11.09□□□□□ -0.63
Hmgb3O54879 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
Hmgb3O54879 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Hmgb3O54879 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.08□□□□□ -0.64
Hmgb3O54879 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Tsc2-201ENSMUST00000097373 6018 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC11.08□□□□□ -0.64
Hmgb3O54879 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Hmgb3O54879 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Hmgb3O54879 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms