Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col13a1Q9R1N9 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Gm12922-201ENSMUST00000120626 809 ntBASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col13a1Q9R1N9 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Gm40881-201ENSMUST00000223397 166 ntBASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col13a1Q9R1N9 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col13a1Q9R1N9 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col13a1Q9R1N9 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col13a1Q9R1N9 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col13a1Q9R1N9 Gm29257-201ENSMUST00000186115 639 ntBASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col13a1Q9R1N9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col13a1Q9R1N9 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col13a1Q9R1N9 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col13a1Q9R1N9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Col13a1Q9R1N9 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col13a1Q9R1N9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col13a1Q9R1N9 Gm8495-201ENSMUST00000188740 694 ntBASIC18.12■□□□□ 0.49
Col13a1Q9R1N9 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col13a1Q9R1N9 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col13a1Q9R1N9 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col13a1Q9R1N9 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.11■□□□□ 0.49
Col13a1Q9R1N9 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC18.11■□□□□ 0.49
Col13a1Q9R1N9 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col13a1Q9R1N9 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col13a1Q9R1N9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col13a1Q9R1N9 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col13a1Q9R1N9 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Col13a1Q9R1N9 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.1■□□□□ 0.49
Col13a1Q9R1N9 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col13a1Q9R1N9 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col13a1Q9R1N9 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col13a1Q9R1N9 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC18.09■□□□□ 0.49
Col13a1Q9R1N9 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Col13a1Q9R1N9 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.08■□□□□ 0.48
Col13a1Q9R1N9 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Col13a1Q9R1N9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Col13a1Q9R1N9 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col13a1Q9R1N9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 AC164433.2-201ENSMUST00000226346 1701 ntBASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col13a1Q9R1N9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col13a1Q9R1N9 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col13a1Q9R1N9 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col13a1Q9R1N9 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col13a1Q9R1N9 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col13a1Q9R1N9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col13a1Q9R1N9 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col13a1Q9R1N9 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 14 ms