Protein–RNA interactions for Protein: Q56A07

Scn2b, Sodium channel subunit beta-2, mousemouse

Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2bQ56A07 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn2bQ56A07 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn2bQ56A07 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.18■□□□□ 0.98
Scn2bQ56A07 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Scn2bQ56A07 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Scn2bQ56A07 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Scn2bQ56A07 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn2bQ56A07 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn2bQ56A07 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC21.17■□□□□ 0.98
Scn2bQ56A07 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scn2bQ56A07 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Gm44428-201ENSMUST00000204474 874 ntBASIC21.16■□□□□ 0.98
Scn2bQ56A07 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Scn2bQ56A07 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.15■□□□□ 0.98
Scn2bQ56A07 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scn2bQ56A07 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn2bQ56A07 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Scn2bQ56A07 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Scn2bQ56A07 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC21.14■□□□□ 0.97
Scn2bQ56A07 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn2bQ56A07 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn2bQ56A07 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn2bQ56A07 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Scn2bQ56A07 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Scn2bQ56A07 Cap2-205ENSMUST00000225824 1634 ntBASIC21.12■□□□□ 0.97
Scn2bQ56A07 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Scn2bQ56A07 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Scn2bQ56A07 Gm27502-201ENSMUST00000183495 199 ntBASIC21.12■□□□□ 0.97
Scn2bQ56A07 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn2bQ56A07 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn2bQ56A07 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Scn2bQ56A07 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Scn2bQ56A07 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Scn2bQ56A07 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.1■□□□□ 0.97
Scn2bQ56A07 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Scn2bQ56A07 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.09■□□□□ 0.97
Scn2bQ56A07 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.09■□□□□ 0.97
Scn2bQ56A07 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.09■□□□□ 0.97
Scn2bQ56A07 Gm12366-201ENSMUST00000121722 873 ntBASIC21.09■□□□□ 0.97
Scn2bQ56A07 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.09■□□□□ 0.97
Scn2bQ56A07 Gm5786-201ENSMUST00000085368 882 ntBASIC21.09■□□□□ 0.97
Scn2bQ56A07 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC21.09■□□□□ 0.97
Scn2bQ56A07 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Scn2bQ56A07 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC21.08■□□□□ 0.97
Scn2bQ56A07 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Scn2bQ56A07 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Scn2bQ56A07 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Scn2bQ56A07 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Scn2bQ56A07 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Scn2bQ56A07 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Scn2bQ56A07 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn2bQ56A07 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC21.07■□□□□ 0.96
Scn2bQ56A07 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn2bQ56A07 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Scn2bQ56A07 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms