Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim40Q3UWA4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.05■□□□□ 0.8
Trim40Q3UWA4 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trim40Q3UWA4 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trim40Q3UWA4 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.05■□□□□ 0.8
Trim40Q3UWA4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim40Q3UWA4 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trim40Q3UWA4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trim40Q3UWA4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Trim40Q3UWA4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim40Q3UWA4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.02■□□□□ 0.8
Trim40Q3UWA4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.02■□□□□ 0.8
Trim40Q3UWA4 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim40Q3UWA4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim40Q3UWA4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim40Q3UWA4 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Trim40Q3UWA4 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Trim40Q3UWA4 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.02■□□□□ 0.79
Trim40Q3UWA4 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim40Q3UWA4 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC20.01■□□□□ 0.79
Trim40Q3UWA4 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Trim40Q3UWA4 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim40Q3UWA4 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim40Q3UWA4 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim40Q3UWA4 Gm8503-201ENSMUST00000118131 455 ntBASIC20■□□□□ 0.79
Trim40Q3UWA4 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20■□□□□ 0.79
Trim40Q3UWA4 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
Trim40Q3UWA4 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim40Q3UWA4 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim40Q3UWA4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
Trim40Q3UWA4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Gm7199-201ENSMUST00000118327 1485 ntBASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
Trim40Q3UWA4 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim40Q3UWA4 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim40Q3UWA4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim40Q3UWA4 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim40Q3UWA4 Gm4799-201ENSMUST00000095396 657 ntBASIC19.95■□□□□ 0.78
Trim40Q3UWA4 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim40Q3UWA4 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim40Q3UWA4 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms