Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Sox3P53784 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.41■□□□□ 0.86
Sox3P53784 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Sox3P53784 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Sox3P53784 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.4■□□□□ 0.86
Sox3P53784 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sox3P53784 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sox3P53784 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Sox3P53784 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.4■□□□□ 0.86
Sox3P53784 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Sox3P53784 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Sox3P53784 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Sox3P53784 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.86
Sox3P53784 Gm21956-201ENSMUST00000179946 522 ntBASIC20.39■□□□□ 0.85
Sox3P53784 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Sox3P53784 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Sox3P53784 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sox3P53784 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sox3P53784 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sox3P53784 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Sox3P53784 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sox3P53784 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.38■□□□□ 0.85
Sox3P53784 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.38■□□□□ 0.85
Sox3P53784 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Sox3P53784 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox3P53784 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Sox3P53784 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Sox3P53784 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox3P53784 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox3P53784 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sox3P53784 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Sox3P53784 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.36■□□□□ 0.85
Sox3P53784 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Gm9847-201ENSMUST00000052528 599 ntBASIC20.36■□□□□ 0.85
Sox3P53784 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Sox3P53784 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.36■□□□□ 0.85
Sox3P53784 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Sox3P53784 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Sox3P53784 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Sox3P53784 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.35■□□□□ 0.85
Sox3P53784 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sox3P53784 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sox3P53784 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.34■□□□□ 0.85
Sox3P53784 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Sox3P53784 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sox3P53784 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sox3P53784 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sox3P53784 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sox3P53784 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sox3P53784 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.33■□□□□ 0.85
Sox3P53784 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sox3P53784 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
Sox3P53784 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.33■□□□□ 0.84
Sox3P53784 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sox3P53784 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sox3P53784 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Sox3P53784 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Sox3P53784 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sox3P53784 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sox3P53784 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sox3P53784 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sox3P53784 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.31■□□□□ 0.84
Sox3P53784 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sox3P53784 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.31■□□□□ 0.84
Sox3P53784 Gm7417-201ENSMUST00000192950 473 ntBASIC20.31■□□□□ 0.84
Sox3P53784 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.31■□□□□ 0.84
Sox3P53784 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.31■□□□□ 0.84
Sox3P53784 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Sox3P53784 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sox3P53784 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sox3P53784 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sox3P53784 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sox3P53784 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sox3P53784 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sox3P53784 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.29■□□□□ 0.84
Sox3P53784 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sox3P53784 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.29■□□□□ 0.84
Sox3P53784 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sox3P53784 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms