Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Tnfsf4P43488 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Tnfsf4P43488 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.68■□□□□ 0.9
Tnfsf4P43488 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Scarna2-201ENSMUST00000157560 414 ntBASIC20.68■□□□□ 0.9
Tnfsf4P43488 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Tnfsf4P43488 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Tnfsf4P43488 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Tnfsf4P43488 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Tnfsf4P43488 Gm9806-201ENSMUST00000051080 552 ntBASIC20.67■□□□□ 0.9
Tnfsf4P43488 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Tnfsf4P43488 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Tnfsf4P43488 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Tnfsf4P43488 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tnfsf4P43488 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.66■□□□□ 0.9
Tnfsf4P43488 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tnfsf4P43488 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Tnfsf4P43488 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tnfsf4P43488 Gm16437-201ENSMUST00000025669 507 ntBASIC20.65■□□□□ 0.9
Tnfsf4P43488 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tnfsf4P43488 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tnfsf4P43488 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Tnfsf4P43488 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Tnfsf4P43488 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Tnfsf4P43488 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Tnfsf4P43488 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Tnfsf4P43488 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.64■□□□□ 0.89
Tnfsf4P43488 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Tnfsf4P43488 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Tnfsf4P43488 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Tnfsf4P43488 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Tnfsf4P43488 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tnfsf4P43488 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Tnfsf4P43488 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.63■□□□□ 0.89
Tnfsf4P43488 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tnfsf4P43488 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tnfsf4P43488 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Tnfsf4P43488 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.62■□□□□ 0.89
Tnfsf4P43488 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tnfsf4P43488 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Tnfsf4P43488 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.62■□□□□ 0.89
Tnfsf4P43488 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Tnfsf4P43488 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Tnfsf4P43488 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.61■□□□□ 0.89
Tnfsf4P43488 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Tnfsf4P43488 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tnfsf4P43488 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tnfsf4P43488 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tnfsf4P43488 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Tnfsf4P43488 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tnfsf4P43488 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tnfsf4P43488 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tnfsf4P43488 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Tnfsf4P43488 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Tnfsf4P43488 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tnfsf4P43488 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.59■□□□□ 0.89
Tnfsf4P43488 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tnfsf4P43488 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Tnfsf4P43488 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tnfsf4P43488 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.58■□□□□ 0.89
Tnfsf4P43488 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.88
Tnfsf4P43488 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tnfsf4P43488 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tnfsf4P43488 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Tnfsf4P43488 Gm11687-201ENSMUST00000118911 886 ntBASIC20.57■□□□□ 0.88
Tnfsf4P43488 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tnfsf4P43488 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Tnfsf4P43488 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.56■□□□□ 0.88
Tnfsf4P43488 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tnfsf4P43488 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tnfsf4P43488 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tnfsf4P43488 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Tnfsf4P43488 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Tnfsf4P43488 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms