Protein–RNA interactions for Protein: A0A0G2JEM0

Trav3n-3, T cell receptor alpha variable 3D-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3n-3A0A0G2JEM0 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav3n-3A0A0G2JEM0 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC16.08■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC16.07■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav3n-3A0A0G2JEM0 Gm43182-201ENSMUST00000199476 2528 ntBASIC16.02■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC16.01■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC15.99■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav3n-3A0A0G2JEM0 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms