Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Gm9797-201ENSMUST00000052902 613 ntBASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Trim3Q9R1R2 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm3809-201ENSMUST00000180973 1006 ntBASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm42612-201ENSMUST00000197986 623 ntBASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm43170-201ENSMUST00000199827 612 ntBASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 AC139054.1-201ENSMUST00000226898 1598 ntBASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Trim3Q9R1R2 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.67□□□□□ -0.38
Trim3Q9R1R2 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Gm5425-201ENSMUST00000214125 459 ntBASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.67□□□□□ -0.38
Trim3Q9R1R2 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms