Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Gm2260-201ENSMUST00000184965 657 ntBASIC15.68■□□□□ 0.1
Scn11aQ9R053 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Scn11aQ9R053 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC15.67■□□□□ 0.1
Scn11aQ9R053 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gm30285-201ENSMUST00000214614 422 ntBASIC15.67■□□□□ 0.1
Scn11aQ9R053 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gm10608-202ENSMUST00000213924 676 ntBASIC15.67■□□□□ 0.1
Scn11aQ9R053 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gm19221-201ENSMUST00000221827 1477 ntBASIC15.67■□□□□ 0.1
Scn11aQ9R053 Gm38157-201ENSMUST00000194178 1698 ntBASIC15.67■□□□□ 0.1
Scn11aQ9R053 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Gm14028-201ENSMUST00000117434 479 ntBASIC15.66■□□□□ 0.1
Scn11aQ9R053 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
Scn11aQ9R053 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC15.66■□□□□ 0.1
Scn11aQ9R053 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC15.66■□□□□ 0.1
Scn11aQ9R053 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Morn2-202ENSMUST00000227729 656 ntBASIC15.66■□□□□ 0.1
Scn11aQ9R053 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Scn11aQ9R053 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Gm7857-201ENSMUST00000117957 358 ntBASIC15.65■□□□□ 0.1
Scn11aQ9R053 Gm13492-201ENSMUST00000119772 665 ntBASIC15.65■□□□□ 0.1
Scn11aQ9R053 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Gm43416-201ENSMUST00000201916 1015 ntBASIC15.65■□□□□ 0.1
Scn11aQ9R053 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Scn11aQ9R053 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms