Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Gm14350-201ENSMUST00000116642 640 ntBASIC15.86■□□□□ 0.13
Trim56Q80VI1 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC15.86■□□□□ 0.13
Trim56Q80VI1 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trim56Q80VI1 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC15.85■□□□□ 0.13
Trim56Q80VI1 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Gm11814-201ENSMUST00000119515 929 ntBASIC15.85■□□□□ 0.13
Trim56Q80VI1 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Gm24196-201ENSMUST00000179161 110 ntBASIC15.85■□□□□ 0.13
Trim56Q80VI1 Gm7561-201ENSMUST00000211203 886 ntBASIC15.85■□□□□ 0.13
Trim56Q80VI1 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC15.85■□□□□ 0.13
Trim56Q80VI1 AC096628.2-201ENSMUST00000225443 1413 ntBASIC15.85■□□□□ 0.13
Trim56Q80VI1 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trim56Q80VI1 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Gm18187-201ENSMUST00000196476 984 ntBASIC15.84■□□□□ 0.13
Trim56Q80VI1 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC15.84■□□□□ 0.13
Trim56Q80VI1 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Trim56Q80VI1 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trim56Q80VI1 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Trim56Q80VI1 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gm8810-201ENSMUST00000172895 754 ntBASIC15.83■□□□□ 0.12
Trim56Q80VI1 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gm44064-201ENSMUST00000204964 1087 ntBASIC15.83■□□□□ 0.12
Trim56Q80VI1 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trim56Q80VI1 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms