Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Gm27920-201ENSMUST00000183953 96 ntBASIC11.12□□□□□ -0.63
Hmgb3O54879 Gm27628-201ENSMUST00000184911 107 ntBASIC11.12□□□□□ -0.63
Hmgb3O54879 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.12□□□□□ -0.63
Hmgb3O54879 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC11.12□□□□□ -0.63
Hmgb3O54879 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Hmgb3O54879 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gm11873-201ENSMUST00000117877 1304 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gm13410-201ENSMUST00000117058 1415 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gria1-201ENSMUST00000036315 5546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gm24589-201ENSMUST00000116692 94 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Gm12882-201ENSMUST00000121696 517 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC11.11□□□□□ -0.63
Hmgb3O54879 Gm5712-201ENSMUST00000199748 1043 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC11.11□□□□□ -0.63
Hmgb3O54879 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Hmgb3O54879 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 AC123645.1-201ENSMUST00000228469 605 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Rtn3-204ENSMUST00000088171 4973 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Scn9a-201ENSMUST00000100063 9813 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Hmgb3O54879 Scn9a-202ENSMUST00000100064 9840 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Hmgb3O54879 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC11.11□□□□□ -0.63
Hmgb3O54879 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Mtf1-202ENSMUST00000106193 7554 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Hmgb3O54879 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Hmgb3O54879 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Hmgb3O54879 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 226.1 ms