Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim28Q62318 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.37■□□□□ 0.37
Trim28Q62318 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trim28Q62318 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Trim28Q62318 Gm9431-201ENSMUST00000119765 1051 ntBASIC17.36■□□□□ 0.37
Trim28Q62318 Gm8801-201ENSMUST00000173255 1064 ntBASIC17.36■□□□□ 0.37
Trim28Q62318 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC17.36■□□□□ 0.37
Trim28Q62318 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Gm38297-201ENSMUST00000195122 1057 ntBASIC17.36■□□□□ 0.37
Trim28Q62318 Gm44772-201ENSMUST00000207623 1191 ntBASIC17.36■□□□□ 0.37
Trim28Q62318 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 AC153366.2-201ENSMUST00000219461 1984 ntBASIC17.36■□□□□ 0.37
Trim28Q62318 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Trim28Q62318 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Trim28Q62318 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim28Q62318 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Trim28Q62318 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC17.35■□□□□ 0.37
Trim28Q62318 Gm13786-201ENSMUST00000122371 333 ntBASIC17.35■□□□□ 0.37
Trim28Q62318 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Gm26185-201ENSMUST00000157692 266 ntBASIC17.35■□□□□ 0.37
Trim28Q62318 Gm22121-201ENSMUST00000175148 54 ntBASIC17.35■□□□□ 0.37
Trim28Q62318 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 AC166051.1-201ENSMUST00000214313 210 ntBASIC17.35■□□□□ 0.37
Trim28Q62318 AC140406.1-201ENSMUST00000226481 465 ntBASIC17.35■□□□□ 0.37
Trim28Q62318 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim28Q62318 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trim28Q62318 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trim28Q62318 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Trim28Q62318 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trim28Q62318 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Trim28Q62318 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Trim28Q62318 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
Trim28Q62318 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trim28Q62318 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC17.34■□□□□ 0.37
Trim28Q62318 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC17.34■□□□□ 0.37
Trim28Q62318 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC17.34■□□□□ 0.37
Trim28Q62318 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Gm6458-201ENSMUST00000211573 635 ntBASIC17.34■□□□□ 0.37
Trim28Q62318 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC17.34■□□□□ 0.37
Trim28Q62318 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim28Q62318 Gm5989-201ENSMUST00000096092 2077 ntBASIC17.34■□□□□ 0.37
Trim28Q62318 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim28Q62318 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trim28Q62318 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim28Q62318 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim28Q62318 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.33■□□□□ 0.37
Trim28Q62318 CT009713.10-201ENSMUST00000225013 1986 ntBASIC17.33■□□□□ 0.37
Trim28Q62318 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim28Q62318 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim28Q62318 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim28Q62318 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC17.33■□□□□ 0.37
Trim28Q62318 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim28Q62318 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Gm6203-201ENSMUST00000209575 1342 ntBASIC17.33■□□□□ 0.36
Trim28Q62318 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim28Q62318 Gm42627-201ENSMUST00000197347 224 ntBASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms