Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Gm20632-201ENSMUST00000176760 2427 ntBASIC11.64□□□□□ -0.55
Nkx3-1P97436 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx3-1P97436 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC11.63□□□□□ -0.55
Nkx3-1P97436 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Gm8801-201ENSMUST00000173255 1064 ntBASIC11.63□□□□□ -0.55
Nkx3-1P97436 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Gm19184-201ENSMUST00000196798 928 ntBASIC11.63□□□□□ -0.55
Nkx3-1P97436 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx3-1P97436 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gm13369-201ENSMUST00000119442 987 ntBASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gm27682-201ENSMUST00000183930 110 ntBASIC11.62□□□□□ -0.55
Nkx3-1P97436 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Gm19309-201ENSMUST00000218295 205 ntBASIC11.62□□□□□ -0.55
Nkx3-1P97436 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Nkx3-1P97436 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms