Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Gm8712-201ENSMUST00000221090 701 ntBASIC10.8□□□□□ -0.68
Chd6A3KFM7 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Chd6A3KFM7 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Gm4868-201ENSMUST00000164138 789 ntBASIC10.79□□□□□ -0.68
Chd6A3KFM7 Ighv2-1-201ENSMUST00000170946 353 ntBASIC10.79□□□□□ -0.68
Chd6A3KFM7 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Gm10312-201ENSMUST00000078515 489 ntBASIC10.79□□□□□ -0.68
Chd6A3KFM7 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Gm11451-201ENSMUST00000118946 630 ntBASIC10.79□□□□□ -0.68
Chd6A3KFM7 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC10.79□□□□□ -0.68
Chd6A3KFM7 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Gm18204-201ENSMUST00000209835 793 ntBASIC10.79□□□□□ -0.68
Chd6A3KFM7 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Chd6A3KFM7 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm15036-201ENSMUST00000118880 400 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm27046-201ENSMUST00000182160 463 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm5597-201ENSMUST00000182353 1193 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Cdkn3-201ENSMUST00000067426 917 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm13296-201ENSMUST00000117854 997 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm2546-201ENSMUST00000182630 991 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 AC121801.1-201ENSMUST00000225363 1899 ntBASIC10.78□□□□□ -0.68
Chd6A3KFM7 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Chd6A3KFM7 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms