Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm7558-201ENSMUST00000193221 1165 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Gtpbp10-211ENSMUST00000198799 648 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Gm18307-201ENSMUST00000206864 949 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Gm45668-201ENSMUST00000211271 493 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 AC238811.3-201ENSMUST00000225422 709 ntBASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Upf3bQ3ULL6 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Upf3bQ3ULL6 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Gm14752-201ENSMUST00000120719 2075 ntBASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Mir7654-201ENSMUST00000185082 70 ntBASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Wdyhv1-206ENSMUST00000227142 786 ntBASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Upf3bQ3ULL6 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC14.44□□□□□ -0.1
Upf3bQ3ULL6 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms