Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Lig3P97386 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Lig3P97386 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Lig3P97386 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.79□□□□□ -0.04
Lig3P97386 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.79□□□□□ -0.04
Lig3P97386 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Lig3P97386 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Lig3P97386 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Lig3P97386 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Lig3P97386 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.78□□□□□ -0.04
Lig3P97386 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.78□□□□□ -0.04
Lig3P97386 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Lig3P97386 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.78□□□□□ -0.04
Lig3P97386 Gm44974-201ENSMUST00000206387 1279 ntBASIC14.78□□□□□ -0.04
Lig3P97386 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.78□□□□□ -0.04
Lig3P97386 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Gm8399-201ENSMUST00000082300 1117 ntBASIC14.78□□□□□ -0.04
Lig3P97386 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Lig3P97386 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Lig3P97386 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Lig3P97386 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
Lig3P97386 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Mbnl2-204ENSMUST00000227012 2390 ntBASIC14.77□□□□□ -0.04
Lig3P97386 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.77□□□□□ -0.04
Lig3P97386 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Gm9816-201ENSMUST00000122292 1414 ntBASIC14.77□□□□□ -0.04
Lig3P97386 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Lig3P97386 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lig3P97386 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC14.77□□□□□ -0.05
Lig3P97386 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Lig3P97386 AA619741-201ENSMUST00000195095 646 ntBASIC14.77□□□□□ -0.05
Lig3P97386 Gm9728-201ENSMUST00000200197 1055 ntBASIC14.77□□□□□ -0.05
Lig3P97386 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lig3P97386 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.77□□□□□ -0.05
Lig3P97386 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lig3P97386 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Lig3P97386 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lig3P97386 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Lig3P97386 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.77□□□□□ -0.05
Lig3P97386 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Lig3P97386 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.76□□□□□ -0.05
Lig3P97386 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Gm42853-201ENSMUST00000201273 1387 ntBASIC14.76□□□□□ -0.05
Lig3P97386 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.76□□□□□ -0.05
Lig3P97386 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lig3P97386 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Lig3P97386 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Lig3P97386 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
Lig3P97386 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Lig3P97386 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
Lig3P97386 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.76□□□□□ -0.05
Lig3P97386 Gm33320-201ENSMUST00000192232 530 ntBASIC14.76□□□□□ -0.05
Lig3P97386 Gm43179-201ENSMUST00000198797 275 ntBASIC14.76□□□□□ -0.05
Lig3P97386 Gm6916-202ENSMUST00000205523 195 ntBASIC14.76□□□□□ -0.05
Lig3P97386 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.76□□□□□ -0.05
Lig3P97386 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC14.76□□□□□ -0.05
Lig3P97386 Gm7446-201ENSMUST00000221035 1240 ntBASIC14.76□□□□□ -0.05
Lig3P97386 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Lig3P97386 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 90.6 ms