Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 AC116503.1-201ENSMUST00000215445 2192 ntBASIC16.12■□□□□ 0.17
Rfx1P48377 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Gm15467-201ENSMUST00000120582 445 ntBASIC16.12■□□□□ 0.17
Rfx1P48377 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC16.12■□□□□ 0.17
Rfx1P48377 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Gm18206-201ENSMUST00000207027 926 ntBASIC16.12■□□□□ 0.17
Rfx1P48377 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 AC139350.1-201ENSMUST00000227064 1594 ntBASIC16.12■□□□□ 0.17
Rfx1P48377 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Rfx1P48377 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Rfx1P48377 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Rfx1P48377 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Rfx1P48377 AC124751.1-201ENSMUST00000222716 1408 ntBASIC16.11■□□□□ 0.17
Rfx1P48377 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC16.11■□□□□ 0.17
Rfx1P48377 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gm25911-201ENSMUST00000157621 56 ntBASIC16.11■□□□□ 0.17
Rfx1P48377 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC16.11■□□□□ 0.17
Rfx1P48377 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Rfx1P48377 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.11■□□□□ 0.17
Rfx1P48377 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC16.11■□□□□ 0.17
Rfx1P48377 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Rfx1P48377 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Rfx1P48377 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gm43273-201ENSMUST00000199649 2594 ntBASIC16.11■□□□□ 0.17
Rfx1P48377 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gm13857-203ENSMUST00000150561 2337 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Rfx1P48377 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Rfx1P48377 Tmed9-203ENSMUST00000224741 1450 ntBASIC16.1■□□□□ 0.17
Rfx1P48377 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Rfx1P48377 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Rfx1P48377 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Rfx1P48377 Gm9824-201ENSMUST00000178707 561 ntBASIC16.1■□□□□ 0.17
Rfx1P48377 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC16.1■□□□□ 0.17
Rfx1P48377 Gm18934-201ENSMUST00000216671 1044 ntBASIC16.1■□□□□ 0.17
Rfx1P48377 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Rfx1P48377 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Gm15500-202ENSMUST00000071641 1019 ntBASIC16.1■□□□□ 0.17
Rfx1P48377 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Rfx1P48377 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
Rfx1P48377 Gm5989-201ENSMUST00000096092 2077 ntBASIC16.1■□□□□ 0.17
Rfx1P48377 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx1P48377 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms