Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC14.18□□□□□ -0.14
Usp4P35123 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.18□□□□□ -0.14
Usp4P35123 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
Usp4P35123 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Gm8116-201ENSMUST00000182917 1201 ntBASIC14.18□□□□□ -0.14
Usp4P35123 Gm5745-201ENSMUST00000183748 313 ntBASIC14.18□□□□□ -0.14
Usp4P35123 AA619741-201ENSMUST00000195095 646 ntBASIC14.18□□□□□ -0.14
Usp4P35123 Gm18027-201ENSMUST00000218947 619 ntBASIC14.18□□□□□ -0.14
Usp4P35123 Gm6888-201ENSMUST00000221983 706 ntBASIC14.18□□□□□ -0.14
Usp4P35123 Wdyhv1-203ENSMUST00000226889 394 ntBASIC14.18□□□□□ -0.14
Usp4P35123 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp4P35123 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.17□□□□□ -0.14
Usp4P35123 Gm27989-201ENSMUST00000184721 107 ntBASIC14.17□□□□□ -0.14
Usp4P35123 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 AC140375.2-201ENSMUST00000225283 584 ntBASIC14.17□□□□□ -0.14
Usp4P35123 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Usp4P35123 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp4P35123 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.17□□□□□ -0.14
Usp4P35123 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp4P35123 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.16□□□□□ -0.14
Usp4P35123 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Usp4P35123 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.16□□□□□ -0.14
Usp4P35123 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.16□□□□□ -0.14
Usp4P35123 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Gm13823-201ENSMUST00000119930 345 ntBASIC14.16□□□□□ -0.14
Usp4P35123 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Usp4P35123 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.16□□□□□ -0.14
Usp4P35123 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Usp4P35123 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Usp4P35123 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Ighv8-7-201ENSMUST00000194349 297 ntBASIC14.16□□□□□ -0.14
Usp4P35123 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp4P35123 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Usp4P35123 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms