Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cdx1P18111 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC10.93□□□□□ -0.66
Cdx1P18111 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 Grk6-207ENSMUST00000225925 2769 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC10.93□□□□□ -0.66
Cdx1P18111 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Gm27430-201ENSMUST00000184585 107 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Mir7023-201ENSMUST00000185093 64 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Gm44333-201ENSMUST00000197168 107 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Gm43125-201ENSMUST00000201724 730 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Gm18057-201ENSMUST00000208220 503 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 CT025624.1-201ENSMUST00000224007 2700 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cdx1P18111 Gm5939-201ENSMUST00000119613 2874 ntBASIC10.93□□□□□ -0.66
Cdx1P18111 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Cdx1P18111 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cdx1P18111 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
Cdx1P18111 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx1P18111 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC10.92□□□□□ -0.66
Cdx1P18111 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC10.92□□□□□ -0.66
Cdx1P18111 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms