Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ddx56Q9D0R4 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Auts2-212ENSMUST00000178555 309 ntBASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm42612-201ENSMUST00000197986 623 ntBASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm43170-201ENSMUST00000199827 612 ntBASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 AC124732.1-201ENSMUST00000221551 910 ntBASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm5161-201ENSMUST00000075243 853 ntBASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ddx56Q9D0R4 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm28386-201ENSMUST00000189147 1849 ntBASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm19078-201ENSMUST00000206311 727 ntBASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gm4782-201ENSMUST00000168705 2046 ntBASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC14.22□□□□□ -0.13
Ddx56Q9D0R4 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Ddx56Q9D0R4 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms