Protein–RNA interactions for Protein: Q9CWY9

Rpain, RPA-interacting protein, mousemouse

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RpainQ9CWY9 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RpainQ9CWY9 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC14.17□□□□□ -0.14
RpainQ9CWY9 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.16□□□□□ -0.14
RpainQ9CWY9 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Gm7775-201ENSMUST00000218871 853 ntBASIC14.16□□□□□ -0.14
RpainQ9CWY9 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.16□□□□□ -0.14
RpainQ9CWY9 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
RpainQ9CWY9 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm6159-201ENSMUST00000191249 1724 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm15487-201ENSMUST00000122373 465 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm29310-201ENSMUST00000185468 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21825-201ENSMUST00000185728 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm29109-201ENSMUST00000185895 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21896-201ENSMUST00000186520 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21873-201ENSMUST00000186728 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21794-201ENSMUST00000187056 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21880-201ENSMUST00000187275 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21826-201ENSMUST00000187451 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21198-201ENSMUST00000188393 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21749-201ENSMUST00000189343 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21901-201ENSMUST00000189568 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm29424-201ENSMUST00000189716 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm28599-201ENSMUST00000189838 694 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21867-201ENSMUST00000189917 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm29269-201ENSMUST00000190087 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21722-201ENSMUST00000190153 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm28423-201ENSMUST00000190701 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21899-201ENSMUST00000190745 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21910-201ENSMUST00000191163 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21849-201ENSMUST00000191571 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm28678-201ENSMUST00000191593 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm20910-201ENSMUST00000193268 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm21871-201ENSMUST00000194621 696 ntBASIC14.15□□□□□ -0.14
RpainQ9CWY9 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RpainQ9CWY9 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
RpainQ9CWY9 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RpainQ9CWY9 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RpainQ9CWY9 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RpainQ9CWY9 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
RpainQ9CWY9 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms