Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.2□□□□□ -0.3
Msh4Q99MT2 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Msh4Q99MT2 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Gm14752-201ENSMUST00000120719 2075 ntBASIC13.19□□□□□ -0.3
Msh4Q99MT2 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 AL593843.1-201ENSMUST00000195891 145 ntBASIC13.19□□□□□ -0.3
Msh4Q99MT2 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Arhgef33-209ENSMUST00000225223 714 ntBASIC13.19□□□□□ -0.3
Msh4Q99MT2 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Msh4Q99MT2 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.18□□□□□ -0.3
Msh4Q99MT2 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gm5425-201ENSMUST00000214125 459 ntBASIC13.18□□□□□ -0.3
Msh4Q99MT2 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Msh4Q99MT2 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms