Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Gm43423-201ENSMUST00000198390 2094 ntBASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Lsm1Q8VC85 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm14701-201ENSMUST00000117156 348 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm15770-201ENSMUST00000117498 584 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm22175-201ENSMUST00000175007 78 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm25927-201ENSMUST00000175058 117 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm43575-201ENSMUST00000196420 516 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 AC124732.2-201ENSMUST00000221977 316 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 AC154621.1-201ENSMUST00000226155 1119 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm3695-201ENSMUST00000087222 1009 ntBASIC13□□□□□ -0.33
Lsm1Q8VC85 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Lsm1Q8VC85 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Lsm1Q8VC85 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lsm1Q8VC85 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lsm1Q8VC85 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms