Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Upf3bQ3ULL6 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Gm17330-201ENSMUST00000221047 165 ntBASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Upf3bQ3ULL6 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gm21038-201ENSMUST00000222205 1383 ntBASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 AC156560.2-201ENSMUST00000221232 264 ntBASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gm3695-201ENSMUST00000087222 1009 ntBASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Upf3bQ3ULL6 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.47□□□□□ -0.09
Upf3bQ3ULL6 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms