Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Gm15376-201ENSMUST00000122258 783 ntBASIC14.6□□□□□ -0.07
Vti1aO89116 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC14.6□□□□□ -0.07
Vti1aO89116 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.6□□□□□ -0.07
Vti1aO89116 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Gm38671-201ENSMUST00000200573 130 ntBASIC14.6□□□□□ -0.07
Vti1aO89116 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.6□□□□□ -0.07
Vti1aO89116 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Vti1aO89116 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Vti1aO89116 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.59□□□□□ -0.07
Vti1aO89116 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Gm15371-201ENSMUST00000117057 784 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 Gm13689-201ENSMUST00000119360 685 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Gm29649-201ENSMUST00000185649 419 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 Gm5276-201ENSMUST00000196683 1047 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Gm8463-201ENSMUST00000208573 613 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Vti1aO89116 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vti1aO89116 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.59□□□□□ -0.07
Vti1aO89116 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Vti1aO89116 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Vti1aO89116 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Vti1aO89116 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Vti1aO89116 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Vti1aO89116 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm26464-201ENSMUST00000157094 305 ntBASIC14.58□□□□□ -0.08
Vti1aO89116 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm27731-201ENSMUST00000185192 107 ntBASIC14.58□□□□□ -0.08
Vti1aO89116 Gm45784-201ENSMUST00000188360 142 ntBASIC14.58□□□□□ -0.08
Vti1aO89116 Gm9299-201ENSMUST00000206392 1140 ntBASIC14.58□□□□□ -0.08
Vti1aO89116 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC14.58□□□□□ -0.08
Vti1aO89116 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm6091-201ENSMUST00000098307 165 ntBASIC14.58□□□□□ -0.08
Vti1aO89116 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.58□□□□□ -0.08
Vti1aO89116 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
Vti1aO89116 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vti1aO89116 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Vti1aO89116 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Vti1aO89116 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.57□□□□□ -0.08
Vti1aO89116 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Vti1aO89116 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Vti1aO89116 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vti1aO89116 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Vti1aO89116 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms