Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Cdc40Q9DC48 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Gm5425-201ENSMUST00000214125 459 ntBASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Gm17795-201ENSMUST00000214505 757 ntBASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Cdc40Q9DC48 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Gm14452-201ENSMUST00000118680 1632 ntBASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.6□□□□□ -0.39
Cdc40Q9DC48 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Gm8602-201ENSMUST00000184045 607 ntBASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Cdc40Q9DC48 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms