Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm5866-201ENSMUST00000177881 973 ntBASIC13.2□□□□□ -0.3
Col28a1Q2UY11 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Gm43438-201ENSMUST00000198133 379 ntBASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Gm45706-201ENSMUST00000213063 2136 ntBASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Col28a1Q2UY11 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm8775-201ENSMUST00000170943 1327 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm6973-201ENSMUST00000117080 721 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm13223-201ENSMUST00000118609 747 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm27618-201ENSMUST00000183671 60 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Ighv8-14-201ENSMUST00000196781 358 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col28a1Q2UY11 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Gm3809-201ENSMUST00000180973 1006 ntBASIC13.18□□□□□ -0.3
Col28a1Q2UY11 AC121598.1-201ENSMUST00000228224 1019 ntBASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC13.18□□□□□ -0.3
Col28a1Q2UY11 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col28a1Q2UY11 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col28a1Q2UY11 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 91.4 ms