Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Col18a1P39061 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC17.54■□□□□ 0.4
Col18a1P39061 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.54■□□□□ 0.4
Col18a1P39061 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Col18a1P39061 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Col18a1P39061 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC17.53■□□□□ 0.4
Col18a1P39061 Mir7686-201ENSMUST00000200604 57 ntBASIC17.53■□□□□ 0.4
Col18a1P39061 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC17.53■□□□□ 0.4
Col18a1P39061 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col18a1P39061 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Col18a1P39061 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC17.53■□□□□ 0.4
Col18a1P39061 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Col18a1P39061 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Gm6992-201ENSMUST00000217973 1607 ntBASIC17.53■□□□□ 0.4
Col18a1P39061 Gm7851-201ENSMUST00000117574 323 ntBASIC17.53■□□□□ 0.4
Col18a1P39061 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC17.53■□□□□ 0.4
Col18a1P39061 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Col18a1P39061 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col18a1P39061 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.52■□□□□ 0.4
Col18a1P39061 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
Col18a1P39061 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC17.52■□□□□ 0.4
Col18a1P39061 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC17.52■□□□□ 0.4
Col18a1P39061 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col18a1P39061 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
Col18a1P39061 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC17.52■□□□□ 0.39
Col18a1P39061 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col18a1P39061 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC17.51■□□□□ 0.39
Col18a1P39061 Gm11340-201ENSMUST00000119226 412 ntBASIC17.51■□□□□ 0.39
Col18a1P39061 Gm14999-201ENSMUST00000121039 624 ntBASIC17.51■□□□□ 0.39
Col18a1P39061 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC17.51■□□□□ 0.39
Col18a1P39061 Gm8492-201ENSMUST00000182375 987 ntBASIC17.51■□□□□ 0.39
Col18a1P39061 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC17.51■□□□□ 0.39
Col18a1P39061 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col18a1P39061 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC17.51■□□□□ 0.39
Col18a1P39061 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Col18a1P39061 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.51■□□□□ 0.39
Col18a1P39061 Ccdc42os-201ENSMUST00000148019 1335 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Col18a1P39061 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Gm13047-201ENSMUST00000117116 815 ntBASIC17.51■□□□□ 0.39
Col18a1P39061 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Col18a1P39061 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC17.51■□□□□ 0.39
Col18a1P39061 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col18a1P39061 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC17.51■□□□□ 0.39
Col18a1P39061 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col18a1P39061 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms