Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Gm29741-201ENSMUST00000192667 421 ntBASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 AC114543.1-201ENSMUST00000226451 1558 ntBASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 AC164426.2-201ENSMUST00000225993 2492 ntBASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ccdc40Q8BI79 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Gm14767-201ENSMUST00000121559 586 ntBASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ccdc40Q8BI79 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm15460-201ENSMUST00000118147 391 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm13616-201ENSMUST00000120600 222 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm27680-201ENSMUST00000184192 160 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm46209-201ENSMUST00000217912 553 ntBASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Ccdc40Q8BI79 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ccdc40Q8BI79 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms