Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.82□□□□□ -0.36
Clrn3Q8BHH8 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Mir8102-201ENSMUST00000184148 139 ntBASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Gm15889-202ENSMUST00000212669 2443 ntBASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clrn3Q8BHH8 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Gm14371-201ENSMUST00000138925 1518 ntBASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Mir698-201ENSMUST00000102164 109 ntBASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Clrn3Q8BHH8 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms