Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm4986-201ENSMUST00000119731 549 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Gm12997-201ENSMUST00000120207 640 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm6222-202ENSMUST00000182143 629 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm38158-201ENSMUST00000194617 339 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm5363-201ENSMUST00000211927 938 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Usf1Q61069 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Usf1Q61069 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 n-R5s195-201ENSMUST00000082891 119 ntBASIC12.33□□□□□ -0.44
Usf1Q61069 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC12.33□□□□□ -0.44
Usf1Q61069 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Usf1Q61069 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC12.32□□□□□ -0.44
Usf1Q61069 Gm10676-201ENSMUST00000098778 3221 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.32□□□□□ -0.44
Usf1Q61069 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC12.32□□□□□ -0.44
Usf1Q61069 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm11658-201ENSMUST00000120913 1008 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm2231-201ENSMUST00000125661 612 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.32□□□□□ -0.44
Usf1Q61069 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.32□□□□□ -0.44
Usf1Q61069 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm2467-201ENSMUST00000182266 1010 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm6981-201ENSMUST00000182467 1008 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.32□□□□□ -0.44
Usf1Q61069 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm7046-201ENSMUST00000221351 977 ntBASIC12.32□□□□□ -0.44
Usf1Q61069 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC12.32□□□□□ -0.44
Usf1Q61069 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.32□□□□□ -0.44
Usf1Q61069 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Usf1Q61069 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Usf1Q61069 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
Usf1Q61069 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Usf1Q61069 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC12.31□□□□□ -0.44
Usf1Q61069 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC12.31□□□□□ -0.44
Usf1Q61069 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Efs-202ENSMUST00000227037 2540 ntBASIC12.31□□□□□ -0.44
Usf1Q61069 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Usf1Q61069 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.31□□□□□ -0.44
Usf1Q61069 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC12.31□□□□□ -0.44
Usf1Q61069 Gm13123-201ENSMUST00000122173 492 ntBASIC12.31□□□□□ -0.44
Usf1Q61069 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms