Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
Shmt1P50431 Gm13730-201ENSMUST00000121036 1462 ntBASIC14.36□□□□□ -0.11
Shmt1P50431 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shmt1P50431 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.35□□□□□ -0.11
Shmt1P50431 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC14.35□□□□□ -0.11
Shmt1P50431 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC14.35□□□□□ -0.11
Shmt1P50431 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.35□□□□□ -0.11
Shmt1P50431 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.35□□□□□ -0.11
Shmt1P50431 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.35□□□□□ -0.11
Shmt1P50431 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.35□□□□□ -0.11
Shmt1P50431 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC14.35□□□□□ -0.11
Shmt1P50431 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
Shmt1P50431 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Shmt1P50431 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC14.35□□□□□ -0.11
Shmt1P50431 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC14.35□□□□□ -0.11
Shmt1P50431 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
Shmt1P50431 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.35□□□□□ -0.11
Shmt1P50431 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shmt1P50431 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.34□□□□□ -0.11
Shmt1P50431 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC14.34□□□□□ -0.11
Shmt1P50431 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC14.34□□□□□ -0.11
Shmt1P50431 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.34□□□□□ -0.11
Shmt1P50431 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Shmt1P50431 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.34□□□□□ -0.11
Shmt1P50431 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.34□□□□□ -0.11
Shmt1P50431 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Shmt1P50431 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.34□□□□□ -0.11
Shmt1P50431 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC14.34□□□□□ -0.11
Shmt1P50431 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.34□□□□□ -0.11
Shmt1P50431 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Gm44397-201ENSMUST00000195950 113 ntBASIC14.34□□□□□ -0.11
Shmt1P50431 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Shmt1P50431 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.34□□□□□ -0.11
Shmt1P50431 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Shmt1P50431 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Shmt1P50431 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Shmt1P50431 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shmt1P50431 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.33□□□□□ -0.11
Shmt1P50431 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.33□□□□□ -0.11
Shmt1P50431 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Shmt1P50431 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Shmt1P50431 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Shmt1P50431 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Shmt1P50431 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Shmt1P50431 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Shmt1P50431 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Shmt1P50431 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Shmt1P50431 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms