Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.26□□□□□ -0.13
Usp4P35123 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.26□□□□□ -0.13
Usp4P35123 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC14.26□□□□□ -0.13
Usp4P35123 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 AC164107.1-201ENSMUST00000227730 2161 ntBASIC14.26□□□□□ -0.13
Usp4P35123 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Usp4P35123 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 Syt7-205ENSMUST00000224135 1557 ntBASIC14.26□□□□□ -0.13
Usp4P35123 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Usp4P35123 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Gm42934-201ENSMUST00000196920 1345 ntBASIC14.25□□□□□ -0.13
Usp4P35123 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Usp4P35123 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC14.25□□□□□ -0.13
Usp4P35123 Gm5866-201ENSMUST00000177881 973 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Gm27437-201ENSMUST00000183429 107 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Mir8102-201ENSMUST00000184148 139 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Gm17837-201ENSMUST00000186435 985 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Gm29741-201ENSMUST00000192667 421 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC14.25□□□□□ -0.13
Usp4P35123 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Usp4P35123 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Usp4P35123 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Gm10176-201ENSMUST00000159707 2264 ntBASIC14.25□□□□□ -0.13
Usp4P35123 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Usp4P35123 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Usp4P35123 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC14.24□□□□□ -0.13
Usp4P35123 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Usp4P35123 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Usp4P35123 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Gm18049-201ENSMUST00000208909 581 ntBASIC14.24□□□□□ -0.13
Usp4P35123 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.24□□□□□ -0.13
Usp4P35123 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC14.24□□□□□ -0.13
Usp4P35123 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 BC001981-202ENSMUST00000191393 1545 ntBASIC14.24□□□□□ -0.13
Usp4P35123 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Usp4P35123 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Usp4P35123 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.24□□□□□ -0.13
Usp4P35123 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Usp4P35123 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC14.23□□□□□ -0.13
Usp4P35123 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms