Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm16198-201ENSMUST00000118766 670 ntBASIC11.23□□□□□ -0.61
Hmgb3O54879 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm10275-202ENSMUST00000168697 495 ntBASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm10275-201ENSMUST00000092620 635 ntBASIC11.23□□□□□ -0.61
Hmgb3O54879 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Hmgb3O54879 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Tom1l2-206ENSMUST00000102683 4999 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hmgb3O54879 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Fam227a-203ENSMUST00000109648 5187 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.61
Hmgb3O54879 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Gm2272-201ENSMUST00000194903 582 ntBASIC11.22□□□□□ -0.61
Hmgb3O54879 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 AC131709.1-201ENSMUST00000224731 1180 ntBASIC11.22□□□□□ -0.61
Hmgb3O54879 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC11.22□□□□□ -0.61
Hmgb3O54879 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Muc5ac-201ENSMUST00000041924 8256 ntAPPRIS P2 TSL 5 BASIC11.22□□□□□ -0.61
Hmgb3O54879 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hmgb3O54879 Htr2c-202ENSMUST00000096299 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 AC238940.1-201ENSMUST00000225106 1858 ntBASIC11.21□□□□□ -0.61
Hmgb3O54879 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.21□□□□□ -0.61
Hmgb3O54879 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Gm13597-201ENSMUST00000121239 375 ntBASIC11.21□□□□□ -0.61
Hmgb3O54879 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC11.21□□□□□ -0.61
Hmgb3O54879 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Klk2-ps-201ENSMUST00000205342 571 ntBASIC11.21□□□□□ -0.61
Hmgb3O54879 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC11.21□□□□□ -0.61
Hmgb3O54879 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Hmgb3O54879 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 300 ms