Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm7809-201ENSMUST00000153199 742 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Mospd4-201ENSMUST00000180618 576 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm37489-201ENSMUST00000191883 159 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 AC132317.1-201ENSMUST00000227227 962 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 AC022775.2-201ENSMUST00000227885 646 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm8793-201ENSMUST00000183069 1303 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Fbxl12-205ENSMUST00000140702 1555 ntBASIC14.29□□□□□ -0.12
Clp1Q99LI9 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clp1Q99LI9 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm16202-201ENSMUST00000117532 544 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm8805-201ENSMUST00000117848 313 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm25668-201ENSMUST00000157700 129 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm3756-201ENSMUST00000169182 1355 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm20482-202ENSMUST00000174729 825 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Mir433-201ENSMUST00000093564 124 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.28□□□□□ -0.12
Clp1Q99LI9 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Clp1Q99LI9 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.27□□□□□ -0.12
Clp1Q99LI9 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Clp1Q99LI9 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.27□□□□□ -0.13
Clp1Q99LI9 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm17376-201ENSMUST00000166016 84 ntBASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm20614-201ENSMUST00000177106 632 ntBASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm3890-201ENSMUST00000182416 207 ntBASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm19891-201ENSMUST00000189771 303 ntBASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Clp1Q99LI9 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms