Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
Lims1Q99JW4 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lims1Q99JW4 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gm6415-201ENSMUST00000118488 348 ntBASIC12.42□□□□□ -0.42
Lims1Q99JW4 Mir1897-201ENSMUST00000122581 272 ntBASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC12.42□□□□□ -0.42
Lims1Q99JW4 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Shd-206ENSMUST00000225145 998 ntBASIC12.42□□□□□ -0.42
Lims1Q99JW4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.42□□□□□ -0.42
Lims1Q99JW4 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC12.42□□□□□ -0.42
Lims1Q99JW4 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.41□□□□□ -0.42
Lims1Q99JW4 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.41□□□□□ -0.42
Lims1Q99JW4 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.41□□□□□ -0.42
Lims1Q99JW4 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.41□□□□□ -0.42
Lims1Q99JW4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 AC158982.1-201ENSMUST00000228377 901 ntBASIC12.41□□□□□ -0.42
Lims1Q99JW4 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.41□□□□□ -0.42
Lims1Q99JW4 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Lims1Q99JW4 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms