Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gm14126-201ENSMUST00000122345 395 ntBASIC14.18□□□□□ -0.14
Rnf40Q3U319 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gm15579-201ENSMUST00000141299 757 ntTSL 3 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gm29747-201ENSMUST00000194764 585 ntBASIC14.18□□□□□ -0.14
Rnf40Q3U319 Cnot2-201ENSMUST00000020374 1059 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.18□□□□□ -0.14
Rnf40Q3U319 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.18□□□□□ -0.14
Rnf40Q3U319 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf40Q3U319 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Gm3344-201ENSMUST00000169610 603 ntBASIC14.17□□□□□ -0.14
Rnf40Q3U319 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Ank2-226ENSMUST00000189368 339 ntBASIC14.17□□□□□ -0.14
Rnf40Q3U319 Gm43066-201ENSMUST00000199589 1260 ntBASIC14.17□□□□□ -0.14
Rnf40Q3U319 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 AC160338.1-201ENSMUST00000214232 705 ntBASIC14.17□□□□□ -0.14
Rnf40Q3U319 CT009495.1-201ENSMUST00000224221 862 ntBASIC14.17□□□□□ -0.14
Rnf40Q3U319 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf40Q3U319 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm37629-201ENSMUST00000193635 1050 ntBASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm37002-201ENSMUST00000194560 373 ntBASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 AC123645.1-201ENSMUST00000228469 605 ntBASIC14.16□□□□□ -0.14
Rnf40Q3U319 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Rnf40Q3U319 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Rnf40Q3U319 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms