Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Gm7553-201ENSMUST00000185805 1426 ntBASIC11.75□□□□□ -0.53
Nkx3-1P97436 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC11.75□□□□□ -0.53
Nkx3-1P97436 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm16177-201ENSMUST00000120728 718 ntBASIC11.74□□□□□ -0.53
Nkx3-1P97436 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.74□□□□□ -0.53
Nkx3-1P97436 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm8598-201ENSMUST00000221184 836 ntBASIC11.74□□□□□ -0.53
Nkx3-1P97436 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm42853-201ENSMUST00000201273 1387 ntBASIC11.74□□□□□ -0.53
Nkx3-1P97436 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC11.74□□□□□ -0.53
Nkx3-1P97436 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm5187-201ENSMUST00000117317 991 ntBASIC11.73□□□□□ -0.53
Nkx3-1P97436 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Itm2b-204ENSMUST00000228637 783 ntBASIC11.73□□□□□ -0.53
Nkx3-1P97436 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Nkx3-1P97436 Olfr582-201ENSMUST00000098212 960 ntBASIC11.73□□□□□ -0.53
Nkx3-1P97436 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms