Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Chmp6P0C0A3 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Ankra2-208ENSMUST00000226100 1476 ntBASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Gm29741-201ENSMUST00000192667 421 ntBASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Gm9797-201ENSMUST00000052902 613 ntBASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Chmp6P0C0A3 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chmp6P0C0A3 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chmp6P0C0A3 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chmp6P0C0A3 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chmp6P0C0A3 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.83□□□□□ -0.03
Chmp6P0C0A3 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Chmp6P0C0A3 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Ighv1-51-201ENSMUST00000192903 354 ntBASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 AC149294.4-201ENSMUST00000227870 882 ntBASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.83□□□□□ -0.04
Chmp6P0C0A3 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm3809-201ENSMUST00000180973 1006 ntBASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm28760-201ENSMUST00000185995 736 ntBASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Mir497b-201ENSMUST00000093601 125 ntBASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Chmp6P0C0A3 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms