Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm25925-201ENSMUST00000158314 306 ntBASIC15.05■□□□□ -0
Trim9Q8C7M3 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Gm5279-201ENSMUST00000199575 745 ntBASIC15.05■□□□□ -0
Trim9Q8C7M3 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.05■□□□□ -0
Trim9Q8C7M3 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Trim9Q8C7M3 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
Trim9Q8C7M3 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC15.05■□□□□ -0
Trim9Q8C7M3 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.05■□□□□ -0
Trim9Q8C7M3 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Trim9Q8C7M3 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim9Q8C7M3 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Trim9Q8C7M3 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC15.04■□□□□ -0
Trim9Q8C7M3 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.04■□□□□ -0
Trim9Q8C7M3 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC15.04■□□□□ -0
Trim9Q8C7M3 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC15.04■□□□□ -0
Trim9Q8C7M3 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC15.04■□□□□ -0
Trim9Q8C7M3 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim9Q8C7M3 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Trim9Q8C7M3 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim9Q8C7M3 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Foxo6os-201ENSMUST00000152384 2291 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Gm28760-201ENSMUST00000185995 736 ntBASIC15.03■□□□□ -0
Trim9Q8C7M3 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.03■□□□□ -0
Trim9Q8C7M3 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC15.03■□□□□ -0
Trim9Q8C7M3 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Gm4782-201ENSMUST00000168705 2046 ntBASIC15.03■□□□□ -0
Trim9Q8C7M3 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Trim9Q8C7M3 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Trim9Q8C7M3 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Trim9Q8C7M3 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
Trim9Q8C7M3 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Gm43094-201ENSMUST00000196549 921 ntBASIC15.02■□□□□ -0
Trim9Q8C7M3 Gm17330-201ENSMUST00000221047 165 ntBASIC15.02■□□□□ -0
Trim9Q8C7M3 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Trim9Q8C7M3 Gm24447-201ENSMUST00000083977 338 ntBASIC15.02■□□□□ -0
Trim9Q8C7M3 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Trim9Q8C7M3 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms