Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Upf3bQ3ULL6 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Gm5354-201ENSMUST00000182417 973 ntBASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Upf3bQ3ULL6 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Gm12859-201ENSMUST00000117834 427 ntBASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Gm43094-201ENSMUST00000196549 921 ntBASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Upf3bQ3ULL6 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.07
Upf3bQ3ULL6 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Upf3bQ3ULL6 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Upf3bQ3ULL6 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.58□□□□□ -0.07
Upf3bQ3ULL6 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Upf3bQ3ULL6 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
Upf3bQ3ULL6 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Upf3bQ3ULL6 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.58□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms