Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Gm8584-201ENSMUST00000171982 758 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.38□□□□□ -0.43
Lmx1bO88609 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
Lmx1bO88609 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 CT030704.2-201ENSMUST00000228887 494 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC12.37□□□□□ -0.43
Lmx1bO88609 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Lmx1bO88609 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Lmx1bO88609 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Gm38577-201ENSMUST00000221531 4545 ntBASIC12.36□□□□□ -0.43
Lmx1bO88609 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Lmx1bO88609 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Lmx1bO88609 CT030684.3-201ENSMUST00000227308 2445 ntBASIC12.36□□□□□ -0.43
Lmx1bO88609 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Gm15376-201ENSMUST00000122258 783 ntBASIC12.36□□□□□ -0.43
Lmx1bO88609 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.36□□□□□ -0.43
Lmx1bO88609 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.36□□□□□ -0.43
Lmx1bO88609 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Lmx1bO88609 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Lmx1bO88609 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Gm25857-201ENSMUST00000082788 129 ntBASIC12.36□□□□□ -0.43
Lmx1bO88609 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC12.36□□□□□ -0.43
Lmx1bO88609 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Lmx1bO88609 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Lmx1bO88609 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
Lmx1bO88609 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC12.35□□□□□ -0.43
Lmx1bO88609 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Lmx1bO88609 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lmx1bO88609 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Lmx1bO88609 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Lmx1bO88609 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
Lmx1bO88609 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms