Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ccdc9Q8VC31 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Gm4459-201ENSMUST00000118750 468 ntBASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Gm13830-205ENSMUST00000201195 1155 ntBASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Gm19164-201ENSMUST00000210667 640 ntBASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Gm45532-201ENSMUST00000210342 3620 ntBASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ccdc9Q8VC31 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Gm5859-201ENSMUST00000165401 2324 ntBASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ccdc9Q8VC31 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Spr-ps1-201ENSMUST00000089584 605 ntBASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Ccdc9Q8VC31 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms