Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.08■□□□□ 0
Trim9Q8C7M3 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Gm3695-201ENSMUST00000087222 1009 ntBASIC15.08■□□□□ 0
Trim9Q8C7M3 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Trim9Q8C7M3 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trim9Q8C7M3 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim9Q8C7M3 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm14730-201ENSMUST00000122378 1045 ntBASIC15.07■□□□□ 0
Trim9Q8C7M3 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm7498-201ENSMUST00000203282 1084 ntBASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC15.07■□□□□ 0
Trim9Q8C7M3 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim9Q8C7M3 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm10327-201ENSMUST00000105222 1002 ntBASIC15.06■□□□□ 0
Trim9Q8C7M3 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm5069-202ENSMUST00000192714 1011 ntBASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.06■□□□□ 0
Trim9Q8C7M3 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm8775-201ENSMUST00000170943 1327 ntBASIC15.06■□□□□ 0
Trim9Q8C7M3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.06■□□□□ 0
Trim9Q8C7M3 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim9Q8C7M3 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim9Q8C7M3 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.05■□□□□ 0
Trim9Q8C7M3 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms