Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trim28Q62318 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Gm16202-201ENSMUST00000117532 544 ntBASIC17.6■□□□□ 0.41
Trim28Q62318 Gm8805-201ENSMUST00000117848 313 ntBASIC17.6■□□□□ 0.41
Trim28Q62318 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim28Q62318 Gm17420-201ENSMUST00000164753 153 ntBASIC17.6■□□□□ 0.41
Trim28Q62318 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
Trim28Q62318 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC17.6■□□□□ 0.41
Trim28Q62318 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trim28Q62318 Gm10268-201ENSMUST00000085340 555 ntBASIC17.6■□□□□ 0.41
Trim28Q62318 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim28Q62318 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Gm14752-201ENSMUST00000120719 2075 ntBASIC17.6■□□□□ 0.41
Trim28Q62318 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim28Q62318 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim28Q62318 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim28Q62318 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim28Q62318 Trav4d-2-201ENSMUST00000120914 335 ntBASIC17.59■□□□□ 0.41
Trim28Q62318 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC17.59■□□□□ 0.41
Trim28Q62318 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC17.59■□□□□ 0.41
Trim28Q62318 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
Trim28Q62318 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC17.59■□□□□ 0.41
Trim28Q62318 Gm17823-201ENSMUST00000217830 1006 ntBASIC17.59■□□□□ 0.41
Trim28Q62318 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Trim28Q62318 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim28Q62318 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim28Q62318 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim28Q62318 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim28Q62318 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim28Q62318 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim28Q62318 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC17.58■□□□□ 0.41
Trim28Q62318 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Trim28Q62318 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim28Q62318 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim28Q62318 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Trim28Q62318 Gm25261-201ENSMUST00000157416 134 ntBASIC17.58■□□□□ 0.4
Trim28Q62318 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC17.58■□□□□ 0.4
Trim28Q62318 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim28Q62318 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim28Q62318 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim28Q62318 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Gm8399-201ENSMUST00000082300 1117 ntBASIC17.58■□□□□ 0.4
Trim28Q62318 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim28Q62318 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim28Q62318 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.58■□□□□ 0.4
Trim28Q62318 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim28Q62318 AC154725.1-201ENSMUST00000224826 1961 ntBASIC17.58■□□□□ 0.4
Trim28Q62318 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
Trim28Q62318 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Trim28Q62318 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trim28Q62318 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim28Q62318 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC17.57■□□□□ 0.4
Trim28Q62318 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Trim28Q62318 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trim28Q62318 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Trim28Q62318 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim28Q62318 Gm6007-201ENSMUST00000208170 823 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms